rs225573349 SNP Detail

Summary

• ID
  rs225573349
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53869251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTGTCTGG CTTTTCTTTC CATGTTTTTA CAAAATATTA
  TTTTAAAAAA ATGTGTGTAT GAGTATTTGT CTATGTGAGT GCATGTTACA TGTCCTGAGC
  W
  GAAGACGGTG CTGGATTATC TGAGACTGGA GTTACAGGTG GTAGAAAGCT GCCTGGTGTG
  GGTTCTAGAA ACTGAACTCA GGTCCTTTAT ATGAGAACC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383410092	MGP_WTSI_11_53791927	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	T	A	A	A	A	A	A	A	A	T	T	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	T	A	A	A	T	A	A	A	A	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225573349					SNP	A	A	A	A	A	T	A	A	A	A	A	A	A	A	T	T	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	T	A	A	A	T	A	A	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383410092	MGP_WTSI_11_53791927	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53869251 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	996 bp proximal
Gm30927	predicted gene, 30927	1606 bp upstream
Rr447212	regulatory region 447212	543 bp distal
Rr447213	regulatory region 447213	822 bp proximal
Rr447214	regulatory region 447214	1495 bp proximal
Rr447215	regulatory region 447215	1897 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	1600 bp upstream
Tssr101465	transcription start site region 101465	1619 bp upstream
Tssr107965	transcription start site region 107965	1462 bp downstream
Tssr107966	transcription start site region 107966	1524 bp downstream
Tssr107967	transcription start site region 107967	1846 bp downstream
Tssr107968	transcription start site region 107968	1871 bp downstream
Tssr107969	transcription start site region 107969	1929 bp downstream