rs225574122 SNP Detail

Summary

• ID
  rs225574122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116898998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGAAAAA TCAGAAAAGG
  CGGTCAGAAT TTACCCTCAC AAAGCGTTGG ATTTTATCAT TTAAAAGCAA CAGACGGGCT
  TACCAGGCGA GCTGTCTCGG CCCTCTCTTC ATCAGCTCCA GCCTTGAAGA TATTAACAGG
  TGCGAGGGAA AGGGAAGCCT AAGAGAGGAA GCCAACACAC GCCGTTTGAA TGCCAGTACT
  Y
  GTTAACACCC GTCCAGGGCC TCTCACTAGA TCGGGAAGTA GATTATCTAA AGGAAAATTG
  GTTTACCATC TAATTTCAGG AATCCGTCCT GGGAGTGGGG TATTTACTTA AATGGGGAGA
  GGGACGCTCA TATGGGCGCC AGGAATAAAT CATCACACCG ACCCACTGGT CTGAATGGCA
  AAACTAAAGG CAACATTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323494025	CHEV_10_116500149	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225574122					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116898998 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	within coordinates
Cpgi2223	CpG island 2223	122 bp proximal
Rr402250	regulatory region 402250	639 bp upstream
Rr439433	regulatory region 439433	660 bp proximal
Rr439434	regulatory region 439434	1460 bp proximal
Rr439435	regulatory region 439435	1658 bp proximal
Tssr99381	transcription start site region 99381	35 bp upstream
Tssr99382	transcription start site region 99382	242 bp downstream
Tssr99383	transcription start site region 99383	648 bp downstream
Tssr99384	transcription start site region 99384	671 bp downstream