rs225582200 SNP Detail

Summary

• ID
  rs225582200
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17462318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCACTTTT CAGTTTGTTT
  GTACTGCCTT TTCTGAGCCT TTATACAACT TTAATTGTTT TTGTTGTTGC TGTTGTTCTG
  TTTTTCTATT TTTAATCATA GCACTCAAAC TTGGAAAACC TGTTAAGGCA ACTACATGGG
  ATGTTTAAAA AAAAAAATCC AGTTAACATA TTGCTATGGA AACCAGGAAA TAGAAACAGC
  M
  CGCTAATCAT TCATTTAGAC AACTACGGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTAAA ATCCATCTAT TCACCTTCTA TTGAAAGATG TTATAAACTT
  TCAAGCTAAT CAAGATGGCT TTTTAAAGGC CAGGGGCCTT GTAACCAGTA ACACCAGAGT
  TTCAGAATGA GCCACAACCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367526367	MGP_WTSI_6_17412319	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225582200					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367526367	MGP_WTSI_6_17412319	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17462318 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	996 bp proximal
Met	met proto-oncogene	1481 bp upstream
Rr626799	regulatory region 626799	991 bp proximal
Rr626800	regulatory region 626800	1155 bp proximal
Rr626801	regulatory region 626801	1198 bp proximal
Rr626802	regulatory region 626802	1730 bp proximal
Tssr55050	transcription start site region 55050	1113 bp upstream
Tssr55051	transcription start site region 55051	1236 bp upstream
Tssr55052	transcription start site region 55052	1430 bp upstream
Tssr55053	transcription start site region 55053	1507 bp upstream
Tssr55054	transcription start site region 55054	1566 bp upstream
Tssr55055	transcription start site region 55055	1582 bp upstream
Tssr55056	transcription start site region 55056	1608 bp upstream
Tssr55057	transcription start site region 55057	1773 bp upstream
Tssr55058	transcription start site region 55058	1813 bp upstream
Tssr55059	transcription start site region 55059	1852 bp upstream