rs225590438 SNP Detail

Summary

• ID
  rs225590438
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20369773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGTACTT CCTCCAGTCA
  CACAATGCCG CCGCCTTCGG ACATCGTGAA GGTGGCCATA GAATGGCCTG GCGCCTACCC
  TAAACTCATG GAGATTGACC AGGTGAGTAA GGCAGGTAGG ACTGGAGAGC TCACAACAGT
  TTTCTTCTTC GCACTGAGTG GTTGCAGATT TTGAATAGCT TCATGTCCTT ACTCTAAGGG
  S
  CTCTGAAATC CGGGCAGTAC TTACTACAGT GTGGTCTGTG TATATACAAT GGCAGTGGAT
  GGGACTTTTA TAGTCTTGCC CCATCTGCTG GATTCTGTCA ATACTGGGTT CCTATCTGAA
  GCAGTAGTGA TAGCAGCTGG AGGGATTGGG TTCTGAGCAT CAGGACAGAT GGACTGTCCC
  ATCCTACTGC TGGGACTCGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387917458	MGP_WTSI_13_20277472	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225590438					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387917458	MGP_WTSI_13_20277472	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20369773 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5309	CpG island 5309	87 bp distal
Elmo1	engulfment and cell motility 1	within coordinates
Rr270987	regulatory region 270987	1373 bp distal
Rr270988	regulatory region 270988	573 bp distal
Rr270989	regulatory region 270989	28 bp proximal
Rr281054	regulatory region 281054	within coordinates
Rr403595	regulatory region 403595	239 bp downstream
Tssr118580	transcription start site region 118580	614 bp downstream
Tssr118581	transcription start site region 118581	592 bp downstream
Tssr118582	transcription start site region 118582	302 bp downstream
Tssr118583	transcription start site region 118583	239 bp downstream
Tssr118584	transcription start site region 118584	193 bp downstream
Tssr118585	transcription start site region 118585	176 bp downstream