rs225594681 SNP Detail

Summary

• ID
  rs225594681
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19876303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACATCCTG CCTCCCAACC
  TCTGGCCCAT GGTTGCAGCA GTCTCTTTGT AACTTTGAGA CTGAACATAC ATGTATCAGT
  TTCCCTGGGA ATTGGTTTTC AGCATAATGT CCCTTCAGTT CTCCTGATAT TCTCAGATCA
  GGCATGCTCT TTAACTTGCG TTTTCATAGA TTGGATCATT TGAACAGTTG GGTCTTGCCT
  K
  TGGGGCGCCT TTCTGATTGT CCCAGTGCTG AGTAATTGGG TTCTCTCTAA TGGCGTTAAT
  CTTTCTAGCA AATATATCTG CTTTGTCCAC ACCTACCTTG TCTGTAATTT CAAACTTGTT
  TATATTCCTT TTTATCCTAA ATGCACATTT ACATGTGTTA TGCTCTCGTT GCACTCTCTC
  ATTGTAGACC TTGAGAAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360789938	MGP_WTSI_4_19803450	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225594681					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360789938	MGP_WTSI_4_19803450	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19876303 () rs orientation: forward

Symbol	Name	Function Class
Atp6v0d2	ATPase, H+ transporting, lysosomal V0 subunit D2	535 bp downstream
Gm68467	predicted gene, 68467	within coordinates
Tssr41030	transcription start site region 41030	826 bp downstream
Tssr41031	transcription start site region 41031	891 bp downstream
Tssr41032	transcription start site region 41032	908 bp downstream
Tssr41033	transcription start site region 41033	947 bp downstream
Tssr41034	transcription start site region 41034	988 bp downstream
Tssr41035	transcription start site region 41035	1023 bp downstream
Tssr41036	transcription start site region 41036	1050 bp downstream
Tssr41037	transcription start site region 41037	1172 bp downstream
Tssr41038	transcription start site region 41038	1238 bp downstream
Tssr41039	transcription start site region 41039	1250 bp downstream
Tssr41040	transcription start site region 41040	1292 bp downstream
Tssr41041	transcription start site region 41041	1319 bp downstream
Tssr41042	transcription start site region 41042	1326 bp downstream
Tssr41043	transcription start site region 41043	1355 bp downstream
Tssr41044	transcription start site region 41044	1443 bp downstream
Tssr41045	transcription start site region 41045	1468 bp downstream
Tssr41046	transcription start site region 41046	1504 bp downstream
Tssr41047	transcription start site region 41047	1572 bp downstream
Tssr41048	transcription start site region 41048	1591 bp downstream
Tssr41049	transcription start site region 41049	1713 bp downstream
Tssr41050	transcription start site region 41050	1852 bp downstream
Tssr41051	transcription start site region 41051	1997 bp downstream