rs225607389 SNP Detail

Summary

• ID
  rs225607389
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24097153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCAACAG CACTGGCTGC
  TCTTACAGAG GACAGGGGTT CAATTCCCAG CACCCACATG GCAGCTCTCA ACCTTCTGTT
  GCTCTAGTTC CAGGGGATCC AACACTCTCT TCTGGCCTTG GCAGCCACCA GGCAGGCACG
  TGGTGCTCAA TCATACTTAC AAAGCACTCA TACATATAAA AGAAAATGAA ATCTTTAAAA
  M
  ATGTAAGCGG AGGGCTGGGC TAAGGCTCTG TGGTAGGGAG CTTAACAAGC CTACTTAAAT
  TCAGTCCCCA ATACCCTACC TCAAATGTAT GAATGCTGAA ACCTTAACTA AAGGCCCAGT
  GAGGTGGCCT GCTGGGTAAA GGCGCTTGGG ACCCATGGGA TAGAAGGACA GTGCTGATTC
  TTGCTGACTC CTCTGGCATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370783852	MGP_WTSI_7_25182747	EVA_MGPV3	EVA_MGPV3	f	SNP	A	C	C	C	C	C	A	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	A	C	C	C	C	C	C	C	C	A	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225607389					SNP	A	C	C	C	C	C	A	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	A	C	C	C	C	C	C	C	C	A	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370783852	MGP_WTSI_7_25182747	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24097153 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	1458 bp proximal
Gm74022	predicted gene, 74022	1283 bp downstream
Rr643435	regulatory region 643435	345 bp distal
Rr643436	regulatory region 643436	500 bp proximal
Rr643437	regulatory region 643437	1401 bp proximal
Rr643438	regulatory region 643438	1902 bp proximal
Smg9	SMG9 nonsense mediated mRNA decay factor	1953 bp upstream
Tssr64959	transcription start site region 64959	1878 bp upstream
Tssr64960	transcription start site region 64960	1946 bp upstream