rs225615721 SNP Detail

Summary

• ID
  rs225615721
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123302823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGTTAGT TAGAAAGCTG
  TGATCATTAC AGGCTGGGAA GGGTGCGGTT AGGGCAACAC CGTGCAGGAG TCAGTAGGAA
  CGAATTCATT GGAGACAATA CTCGCATTTG AAGGACCTAG AGGGGTTCGT GAACCTCAGC
  TCGCTCACCC ACTATCTCAT TTTACTTAAA ATAATCACTA CTGAATTGAA AGAACTAGTT
  M
  ATCATAAGGC TCAAGTAACC GCGGCGCGTT GCCCAAACAT TTCATTTACA TTCTGGATGG
  TCTTCTGAGG GTGTCCTTAA GAATGGTCTG TATTAGTCCT GAGCTGAGAA GTCCGAGATT
  AAGGGCCTTC CTTCTCTGGC CAGTAGATGG TAGCCTGCAT CTTTCCGTGG GTTTTTCTTT
  TGTGCCTGTC TGCACCTGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320920406	CHEV_3_123212092	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225615721					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123302823 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	216 bp distal
Gm9369	predicted pseudogene 9369	768 bp downstream
Rr584525	regulatory region 584525	300 bp distal
Rr584526	regulatory region 584526	within coordinates
Rr584527	regulatory region 584527	136 bp proximal
Rr584528	regulatory region 584528	1722 bp proximal
Snhg8	small nucleolar RNA host gene 8	838 bp upstream
Snora24	small nucleolar RNA, H/ACA box 24	1108 bp upstream
Tssr31551	transcription start site region 31551	606 bp downstream
Tssr31552	transcription start site region 31552	559 bp downstream
Tssr35502	transcription start site region 35502	833 bp upstream
Tssr35503	transcription start site region 35503	245 bp upstream