rs225619138 SNP Detail

Summary

• ID
  rs225619138
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24600681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gtgccacca acgtgatccc ctgagtttgt
  aatccctggg acccacgtgt ggaaggagag aaccagttct tgtaaactgt cctttgatct
  caactcactg tggagtgctc aggcatgggt gtgtttctcg cacccccccc cacacacaca
  M
  acaaataaat aaataaaatt actatatttt aaaaataaaG AGTAGAAGGA GAGCTGGAGA
  CATGGCTCAG TGGTAGGCTT TTTGTTTGTT TGTGTTTGTT TGTTTGACAA ACATGAACCA
  TAGATTCAAT TCCTAGTACC CTGGGTGGGA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321495664	CHEV_5_23901501	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225619138					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24600681 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	within coordinates
Cpgi15597	CpG island 15597	927 bp distal
Rr112284	regulatory region 112284	520 bp proximal
Rr112285	regulatory region 112285	1720 bp proximal
Rr124925	regulatory region 124925	280 bp distal
Rr398998	regulatory region 398998	1974 bp downstream
Rr398999	regulatory region 398999	1213 bp downstream
Tssr45412	transcription start site region 45412	1253 bp downstream