rs225621011 SNP Detail

Summary

• ID
  rs225621011
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55481247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATGatttta attttttctt taattttatt
  ttaCTGTCct ctctctctct ctctctctct ctctctctct ctccctctct ctctcgtcat
  ctttctcatt tctccctgtc ctctctctgt ttctgtctct ctttgtttct gtctctgtct
  C
  tctttgtttc tgtctctgtc tctgtctctc tctctgtctc tgtctctctc tctGTGtatg
  tgtgtgtgcg tgcatatgca tgtatgtgat tgtactgtgg ttgcattgac cacagagtct
  agaagagggt gtcaagtccc tagaacttga                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319728638	CHEV_1_55498932	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225621011					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55481247 () rs orientation: forward

Symbol	Name	Function Class
Gm6644	predicted gene 6644	1986 bp downstream
Gm38056	predicted gene, 38056	within coordinates
Plcl1	phospholipase C-like 1	within coordinates