rs225625553 SNP Detail

Summary

• ID
  rs225625553
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85530909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAAGGGG AGAGAAAAAG
  ATTATGCACT TAGGCTCTCT GCTGGGTGTT TTTGTTGCAC ATGGCCCCTT TTGGGACATA
  GTGGGGAGGG GGAGGAGTTA GCCTTCCTAG ACTGGTCTGG CCAGAGGCAG TAGAGTCAAC
  CGGGGGCTTC ACTGCCAGAG TGGCAGGCAT TGTTTCGGAT GCCCCCTCCT TCCCCCCCCC
  R
  CCCCCCTCCC CCTCCCGGCG AAAAGACCTG AGCTACTTCC CTGTAGCCTG AAAGGTAGAA
  CAGTGGTTAC CGTTATGCTA CCCGAGGTCA GCCAGGGTGT GAGTGGGCAT GGCCAGTGCT
  AGCAACACAG GCAGCTGTGG TGGACAGAAG GTCTAAGGGG GAGAGACACA TAGGGACCCT
  ACAGAGCCTG GTTCAGCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	CE/J	CZECHII/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	RIIIS/J	SJL/J	SWR/J
ss394811580	MGP_WTSI_15_85477138	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	G	G	G	A	G	G	A	G	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	CE/J	CZECHII/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	RIIIS/J	SJL/J	SWR/J
rs225625553					SNP	G	A	A	G	G	G	A	G	G	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394811580	MGP_WTSI_15_85477138	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85530909 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7486	CpG island 7486	381 bp distal
D130051D11Rik	RIKEN cDNA D130051D11 gene	within coordinates
Gm62280	predicted gene, 62280	within coordinates
Lncppara	long noncoding RNA near Ppara	within coordinates
Rr507251	regulatory region 507251	979 bp distal
Rr507252	regulatory region 507252	258 bp distal
Rr507253	regulatory region 507253	within coordinates
Tssr132525	transcription start site region 132525	995 bp downstream
Tssr132526	transcription start site region 132526	581 bp downstream