rs225625972 SNP Detail

Summary

• ID
  rs225625972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:36266355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCTCTTA GCTTCTGTCA
  GCTGTGGGTG TTTACTCATC GTGGTCCACA TCGGCTTTCC CTCTGAGAAC ACTACTACTC
  ACTTCTTTTC CTGGAATTTT CTAATCTCTA CTCAAATAAT TTTTTGTTAA ATATTCATTA
  TGCTTTTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTAGG TGTGTTCGTG
  Y
  CAGTGCAAGA GTGTGTACCT GTGTGGACAA CCTTAGGTAT TACCCTCGGA TAATCTGATC
  TATCTCCTTT GAGACAAGCT CTCCACTGAG CAGCCTATCA CCAATTAGCC TCGTCTGGGG
  ACCCAAGGGA TCCTCCTTTC CACACTGCCG CAGTGCTGAG ATCACAAGCA TGCACCACCA
  CAGTCTAGTT TTTCCATAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324007787	CHEV_12_36942943	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225625972					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:36266355 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm60325	predicted gene, 60325			1945 bp upstream
Lrrc72	leucine rich repeat containing 72			Intron
				Noncoding-Transcript-Variant
Rr465166	regulatory region 465166			954 bp distal
Rr465167	regulatory region 465167			1082 bp distal
Tssr116139	transcription start site region 116139			1816 bp downstream
Tssr116140	transcription start site region 116140			1832 bp downstream