rs225627427 SNP Detail

Summary

• ID
  rs225627427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:75597943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGC GTTTTCCCAT GACTTTCGTT
  Y
  TGTCTTAACT CTTACAGCAG CTACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324102537	CHEV_12_76652156	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225627427					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:75597943 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm59526	predicted gene, 59526			within coordinates
Ppp2r5e	protein phosphatase 2, regulatory subunit B', epsilon			Intron
				mRNA-UTR
Rr467982	regulatory region 467982			1159 bp proximal
Tssr116681	transcription start site region 116681			1529 bp upstream
Tssr116682	transcription start site region 116682			1508 bp upstream
Tssr116683	transcription start site region 116683			1474 bp upstream