rs225633980 SNP Detail

Summary

• ID
  rs225633980
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:56498426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTGAAGG ACAGGCAGGG
  CCGGCAGGGT GGGGCTCCAG CTGAGGGAAG TAAAGGGATA ATCTGAAGCA CCAGTTGCTG
  CATTAGAGGT GCTCAGGAGC CCATCAGCTC TAAGAAGGCA AACTGAGTTA TTCAGCTCAT
  ACTGCAATGC TAACCCTGGT TGAAATGTGC TTGACTCCTT ATCAGTGACT CTGGTGACAG
  W
  CTGTTTCCCC CTCATGAGAC TTGCTAGACC CTCTCTCCTC CCAAGCACCT TAGGATGAAG
  GCGGAGCCTC CATGGAATCT TTCTAGGCAG GTATGGACTG GTTTTTTTGC TCCTCACCTT
  CCTTCACAGT GAGCAGCAGT CAGCACAAAG TCCTCTCGAA TAAGGAAGCC CCCACATATC
  GCCTCAGGCT GCTGATCCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324645020	CHEV_14_56879806	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225633980					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:56498426 () rs orientation: forward

Symbol	Name	Function Class
Gzmb	granzyme B	within coordinates
Tssr128924	transcription start site region 128924	1203 bp downstream
Tssr128925	transcription start site region 128925	1248 bp downstream
Tssr128926	transcription start site region 128926	1264 bp downstream