rs225634696 SNP Detail

Summary

• ID
  rs225634696
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126814323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCGTCCTT CTCGCGAATC
  AACTTTTCAG TGTCAGCCAG AGGCAACATG GGCAGCGGGA TCTCTGTGGC ACTTTGCCGG
  GAAAGCTTGC TAAGAGAGTA GAGGGAAAGG TTGTGTGCGT TCAGAAAACA TGTTGACGTC
  TGACATTGTG GGTCTAGCCT TGGGGCGAAT TCTGAGTGTA GGAGGCGGGG CCTTGTCCCT
  R
  AGGTTAAGGT CAGTGTGGGA GAGGCTTAGT TGGATTTGGG AAGCCGAGTT AAGAAGGGTA
  GCAGGACCAG TCAGGAAGGC TTGCCCAAAC GGCGGCGCCA TGGAAGCACC AAAATAGCCC
  TGCTCTCACC TGCGGCTGGC TCGATCCCGG GCCCCAGGTC GAGCCAGACT CTGTAGGCAG
  CGAGCCCGGT AGCCCTCGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373083309	MGP_WTSI_7_134358665	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225634696					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373083309	MGP_WTSI_7_134358665	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126814323 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19731	CpG island 19731			244 bp distal
Cpgi19732	CpG island 19732			60 bp proximal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle			864 bp downstream
Rr655746	regulatory region 655746			1437 bp distal
Rr655747	regulatory region 655747			289 bp proximal
Septin1	septin 1			Intron
				Noncoding-Transcript-Variant
Tssr69176	transcription start site region 69176			1962 bp downstream
Tssr69177	transcription start site region 69177			1948 bp downstream
Tssr69178	transcription start site region 69178			907 bp downstream
Tssr69179	transcription start site region 69179			890 bp downstream
Tssr69180	transcription start site region 69180			584 bp downstream
Tssr74959	transcription start site region 74959			1673 bp upstream
Tssr74960	transcription start site region 74960			934 bp upstream
Tssr74961	transcription start site region 74961			388 bp upstream
Tssr74962	transcription start site region 74962			118 bp upstream
Tssr74963	transcription start site region 74963			81 bp upstream
Tssr74964	transcription start site region 74964			48 bp upstream
Tssr74965	transcription start site region 74965			178 bp downstream
Tssr74966	transcription start site region 74966			228 bp downstream
Tssr74967	transcription start site region 74967			532 bp downstream