rs225636809 SNP Detail

Summary

• ID
  rs225636809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58276925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCACACAA AGTGACAGGA
  GTAGTAAGAG AAGCAGATAA CATCTCAGTG TTTTATAAAA GTGGCTTTAA CCATTTGGAA
  TCTCTGCAGG TCTCAGGGAC CCAGGAGTTC CTGGACCACA GTCTGAGAAG TGGTTTTCTA
  GATCAACGTC TCCATTTAGA GCAGCAGTTC TCAACCTGTG GACCACAACC ATTGAAACCC
  Y
  CAACCATAAG TTTATTTCTG TTGCTACTTC ATAACTGTAA GTTTGCTACT GAGCAATTTC
  TAAGACCAAT GGAAATATGT GTTTTTCTGA TGGTCATGAT CCACAGGTTG AGAACCACTG
  ATTCAGAAGA AGAAACAAAA CAAAACAAAA CAAAAAAAAA CAAAACAAAC AATGTGGGCA
  GAGATGGTGA GGTTCCTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323690049	CHEV_11_58199601	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225636809					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58276925 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr101735	transcription start site region 101735	1479 bp downstream
Tssr101736	transcription start site region 101736	1411 bp downstream
Tssr101737	transcription start site region 101737	1371 bp downstream
Tssr101738	transcription start site region 101738	1353 bp downstream
Tssr101739	transcription start site region 101739	624 bp upstream
Tssr101740	transcription start site region 101740	688 bp upstream
Tssr101741	transcription start site region 101741	716 bp upstream
Tssr108157	transcription start site region 108157	671 bp downstream
Tssr108158	transcription start site region 108158	723 bp downstream