rs225639153 SNP Detail

Summary

• ID
  rs225639153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14652557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTTAAAA AAAATAAAAC
  ATAACAAGAT CTTCTGGACT AATCAATTTG CCTAATACAG TCAACAGGGT CTTCAAGAGA
  GTTCTAGGAA GACCTGACTA TGGAGAACTG AGGAGATGAC AGGGTGAAAA AGGTATCTGT
  GCCTTGTTTT ACCGGCTTTG AAGACAAGAA AGGCATCGTA AGCCAACACA TGCACCTAGC
  Y
  TCTAGAATCT GGCACGGCAA AGGAGCAGAT TATTTCCCAG AAGCTCCAGC AAGAAATGCC
  TTGGGCCAAT GAACCCCAGA CGGGACATCT AACTTACTGA CATGCAAGAC AGGAAATCTG
  TGTTACACCA GCAAAAAACT TCTAATAGCC ATAGAAAACA GTTCGTTTTC ACTACTGCTA
  CTCAGATGGA CGTGGTATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390182863	MGP_WTSI_14_8649730	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	T	C	C	T	C	T	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225639153					SNP	T	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	T	C	C	T	C	T	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390182863	MGP_WTSI_14_8649730	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14652557 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6153	CpG island 6153	497 bp distal
Flnb	filamin, beta	741 bp upstream
Rr287260	regulatory region 287260	357 bp distal
Rr294575	regulatory region 294575	548 bp proximal
Rr294576	regulatory region 294576	891 bp proximal
Rr296824	regulatory region 296824	556 bp distal
Rr404014	regulatory region 404014	491 bp downstream
Tssr124212	transcription start site region 124212	758 bp upstream
Tssr124213	transcription start site region 124213	788 bp upstream
Tssr124214	transcription start site region 124214	839 bp upstream