rs225643412 SNP Detail

Summary

• ID
  rs225643412
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90015960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG CCCCCTCTTT GTAGTTTGTA
  C
  CCTTTGCTCA TTCCATACCA TTTTA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325274602	CHEV_16_90219317	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225643412					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90015960 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8420	CpG island 8420	1228 bp proximal
Rr519070	regulatory region 519070	1376 bp distal
Rr519071	regulatory region 519071	761 bp distal
Rr519072	regulatory region 519072	1192 bp proximal
Rr519073	regulatory region 519073	1693 bp proximal
Rr519074	regulatory region 519074	1701 bp proximal
Sod1	superoxide dismutase 1, soluble	1690 bp upstream
Tssr139276	transcription start site region 139276	589 bp upstream
Tssr139277	transcription start site region 139277	1462 bp upstream
Tssr139278	transcription start site region 139278	1497 bp upstream
Tssr139279	transcription start site region 139279	1522 bp upstream
Tssr139280	transcription start site region 139280	1548 bp upstream
Tssr139281	transcription start site region 139281	1564 bp upstream
Tssr139282	transcription start site region 139282	1636 bp upstream
Tssr139283	transcription start site region 139283	1675 bp upstream