rs225644236 SNP Detail

Summary

• ID
  rs225644236
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30816217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGGGAGAT GAGGCCCAGA ACCTCCTGCC CACTACTGTC
  CCTGTCCCGA CCCCTCTTGA CCCCATCAAG CAGGGGTGGG GCCGGCTGGC CTGGCAGTGC
  R
  TGTGGGAAGT GGCCTATGTG CAAATCAGCA AAAAGAAGGG GCGGGGCCTG CCCCCTCGCC
  TCACCGCCCC CTCCCCCAAA CAGGCAGCAA AAGCAGGGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322139447	CHEV_7_31901811	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225644236					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30816217 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	668 bp distal
Hpn	hepsin	1502 bp upstream
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71933	transcription start site region 71933	1484 bp upstream
Tssr71934	transcription start site region 71934	100 bp downstream