rs225644960 SNP Detail

Summary

• ID
  rs225644960
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108637964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATAGGAAC ATACCTCTTG
  AGACCCTCGG ATCCTCCCTT CCAGGGCAGC CCTTTCTCAG ACTCTACTAA GTGCAGACAG
  GAGCGCACAG TGGCCCCTGC TCGCCGCATC ATGGAACGGA TCCCCAGCGC GCAACCACCT
  CCTACCTGCC TGCCCAAAGC TCCAGGGCTG GAGCACGGAG ACCTGTCAGG GTAAGTGTGT
  R
  CTGTGATCCC TTCAAGTCTC CACTCCTAAC CTTGTGTTCC GCGACACTCT CAACTTGGGG
  CATCTCTGAG AGTATAGGGG GCTTCTTTCA CGTCTAGGGC TCCTGCAGCT AGTACGCACT
  CGGGAGTCAC GGCTTTTTCT GACCTCTCTC CCTGCAGGAT GGATTTTGCC CACATGTACC
  AAGTGTACAA GTCCAGGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369592099	MGP_WTSI_6_108610997	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225644960					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369592099	MGP_WTSI_6_108610997	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108637964 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	69 bp upstream
4833447P13Rik	RIKEN cDNA 4833447P13 gene	1463 bp upstream
Bhlhe40	basic helix-loop-helix family, member e40	within coordinates
Cpgi17812	CpG island 17812	within coordinates
Gm17055	predicted gene 17055	1410 bp downstream
Rr399817	regulatory region 399817	579 bp upstream
Rr636154	regulatory region 636154	1992 bp distal
Rr636155	regulatory region 636155	1066 bp distal
Rr636156	regulatory region 636156	119 bp distal
Rr636157	regulatory region 636157	258 bp distal
Rr636158	regulatory region 636158	within coordinates
Rr636159	regulatory region 636159	600 bp proximal
Tssr58071	transcription start site region 58071	1336 bp downstream
Tssr58072	transcription start site region 58072	557 bp downstream
Tssr58073	transcription start site region 58073	506 bp downstream
Tssr58074	transcription start site region 58074	469 bp downstream
Tssr58075	transcription start site region 58075	321 bp downstream
Tssr58076	transcription start site region 58076	216 bp downstream
Tssr58077	transcription start site region 58077	137 bp downstream
Tssr58078	transcription start site region 58078	744 bp upstream
Tssr58079	transcription start site region 58079	987 bp upstream
Tssr58080	transcription start site region 58080	1336 bp upstream
Tssr58081	transcription start site region 58081	1767 bp upstream
Tssr62390	transcription start site region 62390	1581 bp upstream
Tssr62391	transcription start site region 62391	1180 bp upstream