rs225647654 SNP Detail

Summary

• ID
  rs225647654
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:149199981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATATATG TATATGTGTG
  CATATATGTG TGTGTGTATA TATACATGTG TATATATATA TATATACATA TATATATCTG
  TCTATCTATC TATCTATCTA TCTATCTATC TATCTATCTA TCTGCTACAT GTTGGGGGCT
  CATCCGTCCC ACTCTCCATT GCCTGTCTTC ACCTAGGGGT GGGGTCTAGT GAGATTCCCC
  Y
  AGACATGTTG GCATGTCAAT GGGGGTCATT GTTCAGTTCT TCTTTAGATG ACCACACATG
  GGAGCAGCTT CCATGCCATA GAGGATACAA TCTCCCCATT CTTCCTGTCA CAGTGGGGAC
  TACTCTCTTC TCATCAGGCT GGAGATAAAT TCAGGGAAGC CAGCTGAGGT GTTTGAGAGT
  CCTCTCTGGG TAGTCTCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321720212	CHEV_5_150074747	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225647654					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:149199981 () rs orientation: forward

Symbol	Name	Function Class
Alox5ap	arachidonate 5-lipoxygenase activating protein	1833 bp upstream
Rr111673	regulatory region 111673	781 bp distal
Rr124816	regulatory region 124816	1819 bp proximal
Rr131177	regulatory region 131177	1068 bp distal
Tssr49889	transcription start site region 49889	1864 bp upstream
Tssr49890	transcription start site region 49890	1906 bp upstream