rs225651233 SNP Detail

Summary

• ID
  rs225651233
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102526288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAAATAAT AACAGCAGGT ATCCGAGGCC CCGTTGGGCA
  TGGGAAAAAA AGACTAAACG CAGGTATCCG AGGTCCCGAT GGACCGAGAA AGGTTTTTTT
  K
  TTTTTTTTTT TTTTTTTACA AAAAGCAGGT ATCCATGGCC CCGATGGGCT AAGGAGAAGA
  AAAAAAGAAT AAAAGCAGGT ATCCACAGCC CAGATGGGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss404206077	MGP_WTSI_X_100678021	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	G	T	T	G	T	T	G	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	G	G	G	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs225651233					SNP	T	T	T	G	T	T	G	T	T	G	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	G	G	G	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404206077	MGP_WTSI_X_100678021	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102526288 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22887	CpG island 22887	435 bp distal
Gm26992	predicted gene, 26992	977 bp downstream
Gm55587	predicted gene, 55587	1656 bp downstream
Rr693003	regulatory region 693003	242 bp distal
Rr693004	regulatory region 693004	931 bp distal
Rr693005	regulatory region 693005	455 bp proximal
Rr693006	regulatory region 693006	562 bp proximal
Rr693007	regulatory region 693007	1460 bp proximal
Rr693008	regulatory region 693008	1546 bp proximal
Tsix	X (inactive)-specific transcript, opposite strand	within coordinates
Tssr161724	transcription start site region 161724	16 bp upstream
Tssr163951	transcription start site region 163951	1913 bp upstream
Tssr163952	transcription start site region 163952	1886 bp upstream
Tssr163953	transcription start site region 163953	1747 bp upstream
Tssr163954	transcription start site region 163954	105 bp upstream
Tssr163955	transcription start site region 163955	98 bp downstream
Tssr163956	transcription start site region 163956	150 bp downstream
Tssr163957	transcription start site region 163957	352 bp downstream
Tssr163958	transcription start site region 163958	523 bp downstream
Tssr163959	transcription start site region 163959	561 bp downstream
Xist	inactive X specific transcripts	within coordinates