rs225652003 SNP Detail

Summary

• ID
  rs225652003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56425868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTGCTGT TTAATCCTGA
  GAGCTGTTAA GCCTGTCAGT TCTGACCCCA TTTTACAGAT CAGCAAACTG AGACCCAAGT
  TTTAACCCAC TCTCCCCAGC TCCCTCTGCA GGACTGGGGT GAGAAGCCTA GTTTTGCCCA
  GTCATATGCT TGTCACCCAG AGCCACAAGG TGGAGACAGG AGAATCATGA GCTCAAATCA
  Y
  CCTAGGCTTA TAGCAAATTT GAGGCCAGCC TGGGCAATAT GAAACCGGGC CTTTAAAAAA
  AAAATCCACA CCCCTGCCTC TCAATGGGCA GAGTCCCTCT GTCTAGGGGG TGAAAAAAAC
  TAAAGCTGGG TTGTGATGCA GGACTTTAAT CCCAGCACTC AGGAGGTAGA GGCAGGAGGA
  CCTCTGACTT TGAGACCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398551783	MGP_WTSI_17_56258291	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225652003					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398551783	MGP_WTSI_17_56258291	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56425868 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9339	CpG island 9339	1141 bp distal
Cpgi9340	CpG island 9340	928 bp proximal
Gm56918	predicted gene, 56918	906 bp upstream
Lrg1	leucine-rich alpha-2-glycoprotein 1	810 bp downstream
Plin5	perilipin 5	1272 bp upstream
Rr332132	regulatory region 332132	within coordinates
Rr340021	regulatory region 340021	1067 bp distal
Rr340022	regulatory region 340022	732 bp proximal
Tssr5174	transcription start site region 5174	1326 bp upstream
Tssr148747	transcription start site region 148747	1585 bp upstream
Tssr148748	transcription start site region 148748	1317 bp upstream
Tssr148749	transcription start site region 148749	1280 bp upstream
Tssr148750	transcription start site region 148750	1248 bp downstream
Tssr148751	transcription start site region 148751	1425 bp downstream
Tssr148752	transcription start site region 148752	1480 bp downstream
Tssr148753	transcription start site region 148753	1745 bp downstream
Tssr148754	transcription start site region 148754	1803 bp downstream
Tssr148755	transcription start site region 148755	1925 bp downstream
Tssr148756	transcription start site region 148756	1964 bp downstream