rs225653161 SNP Detail

Summary

• ID
  rs225653161
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:102618887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCAGAAC CTAGTGCATA
  ATGGGTCTCA GATCAGCCAC AGAAATGTCA GAGGGGCCAC CTAAAGCCAA GGTCTGTCCT
  ACCAGTTGCC AATGGTCAAT GGACCTTAGC AATTTACCAA ACTGGAATAA AAGGGAGATG
  GTTTCAACAA AACCAGTGAA GCTCCCCTTG TCTCTCCGCC ACCCTCCTTT CCCCCTTCCC
  M
  CCCCCCCCCC CCCGTCATCA TGTCAAATGT CATTAGTGTG ACTCCAGGGA GAGAAGAATT
  CTGGGGTAGA AGCTCATAGA TTCAGGGAAA TAGCCTTAAA TGGAGGCAGC GCATCATTCC
  GTTTAGAGCC TGGTCTTGTG TTCAGAGAGC TAAGTGAGAT TGTTAAGATT CTATGGTTAA
  ATCAATTTTA GTTAATTCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321234812	CHEV_4_102434295	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225653161					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102618887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14510	CpG island 14510	1204 bp distal
Rr596308	regulatory region 596308	1155 bp distal
Rr596309	regulatory region 596309	667 bp distal
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1	within coordinates
Tssr38069	transcription start site region 38069	1506 bp downstream
Tssr38070	transcription start site region 38070	1412 bp downstream
Tssr38071	transcription start site region 38071	1315 bp downstream