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rs225656954 SNP Detail
Summary
  • ID
    rs225656954
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:164673833 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAACAAACAA ACAAACAAAA
    CAAAACAAAA AGAAAGAATT TCTCAACCTG GAGTTTGTGA CAGCTCCAAA CCCACATGTC
    CAAATCTCAG AACATTTTTC TAAGGAAAAC ACACAACACA TAGCTGAATG TGGTTAAAGG
    TGGCGGCTCA TGGCTAATCC CAACCATCCC CACAGGCTGA GGCAGAAAAG ACTGTAAAAA
    R
    TCCATCCGGA GCCTACCTGG GCTACTTACT GAAATCCAGA GCAGCCTTGT CTCCAGAGTA
    AATTAGTCTC AGAAAACCAA AAATAAATAA ACGCACAAAA TTCTCAACAA GTCTCTGGCC
    TAAAATCAGT TTTAGAATCC CTGTCTTCCG GGCTGGGGCG TGCATGAGAA CCTGACTTGG
    TTTCCAGGAC AAAATTTAAA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss356441764 MGP_WTSI_2_164657413 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225656954 SNP G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss356441764 MGP_WTSI_2_164657413 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:164673833 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12674 CpG island 12674 799 bp proximal
Ctsa cathepsin A 960 bp upstream
Neurl2 neuralized E3 ubiquitin protein ligase 2 within coordinates
Rr367364 regulatory region 367364 1849 bp upstream
Rr397479 regulatory region 397479 410 bp downstream
Tssr21656 transcription start site region 21656 949 bp upstream
Tssr21657 transcription start site region 21657 968 bp upstream
Tssr21658 transcription start site region 21658 1046 bp upstream
Tssr21659 transcription start site region 21659 1853 bp upstream
Tssr21660 transcription start site region 21660 1868 bp upstream
Tssr21661 transcription start site region 21661 1928 bp upstream
Tssr27546 transcription start site region 27546 1525 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory