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rs225663415 SNP Detail
Summary
  • ID
    rs225663415
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:109759976 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      AATACTTTG AGCTAACACA GAATCTCAGC
    AGCCAGAACA TCTAGGTTCA AAGGATGGCT CCAACTCTTA AATTCATACT AACTTTGGGG
    TCTTGGGAAG TTCCTTGTGA TCTCTGTGTT CACCTAGTTT TTCAATGTCT CTATTTGTTG
    Y
    GAGTATTATT ATATAAATTG ATAGATGGAA ATCATAAAGG CTGTTATTTC ATAAGTAATA
    TTCTTGCATT AGTTACTCTT GTCTTAGTTT ACTCCTTGAG CAGCTCTGTG ATAGATGTTG
    CTGATTAAAT GCTAGAGATT TACCTCTTGA                                 
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss320870671 CHEV_3_109655578 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs225663415 SNP T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:109759976 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ntng1 netrin G1 within coordinates
Rr65057 regulatory region 65057 425 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory