rs225667439 SNP Detail

Summary

• ID
  rs225667439
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128783984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGATTAGGT TGTGGGCTCC TCATAGCTGT
  CTCATGTTTG AATTCCTAAG ACAACCACAG TCTTCAGACA GTTTTGCTTT CTGAGGCTAT
  AAAATGTCTT AGATAATGTG CAAACTCAGC TGTCAGGCTT TGTGCTCTAG AGAAATTAAT
  W
  GATGTGTTGT CATGAAAGAT GCCCAGGTCT GGGTCTTTTG TGAtgtctta gtgagggtta
  ccgttgctgt gatgaagcac catgagcaaa agcaacttgg gaagggaagg gtttatttgg
  cttatgcttt gacatcactg tttaccactg                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319967630	CHEV_1_130752824	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225667439					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128783984 () rs orientation: forward

Symbol	Name	Function Class
Rr372000	regulatory region 372000	710 bp downstream
Rr417836	regulatory region 417836	802 bp proximal