rs225669432 SNP Detail

Summary

• ID
  rs225669432
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74723526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGATCCTC CTGTTTTTGA
  TCCTGTAGCG AGGGAATCCT CAGAATCTCA GGGTGACATC TATAAGTAAC ATCTCACTGA
  CCCACTAACA GTGTCCCTAA GCCCTTCTGG CAACAACCCG GCCACATTGT TATAAGCTCG
  CCTAAGAAGG GTAAACTTTG GCGCGCCCTC AGAGGCTAAA AGAGGGTTTA TGAGACTGTC
  R
  TCCACCCGCT TTGGCTATGG TCCCTAGCCT TCGAGTGCTG CTTAAATAGG GGCCGAAGGG
  AAAAGACCCC CGCTTTCCAG CCTCTTGTGA GGGCCTCAGT TCTGAAGCAG TGTGTGTGCA
  GTTCCTAGGG ATTCCTGGTT CCCCTACCCC CTCAGAACCC TTCAGTCGGT AGTGTTGTGG
  TGGAGTTCTT CGCCCTCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383889006	MGP_WTSI_11_74646202	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225669432					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383889006	MGP_WTSI_11_74646202	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74723526 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3246	CpG island 3246	216 bp distal
Cpgi3247	CpG island 3247	37 bp proximal
Gm74357	predicted gene, 74357	1885 bp upstream
Mnt	max binding protein	within coordinates
Rr450977	regulatory region 450977	1770 bp distal
Rr450978	regulatory region 450978	1703 bp distal
Rr450979	regulatory region 450979	1462 bp distal
Rr450980	regulatory region 450980	1444 bp proximal
Tssr102911	transcription start site region 102911	1797 bp downstream
Tssr102912	transcription start site region 102912	1780 bp downstream
Tssr102913	transcription start site region 102913	1695 bp downstream
Tssr102914	transcription start site region 102914	1422 bp downstream
Tssr109146	transcription start site region 109146	896 bp upstream
Tssr109147	transcription start site region 109147	690 bp upstream
Tssr109148	transcription start site region 109148	495 bp upstream
Tssr109149	transcription start site region 109149	465 bp upstream