rs225670203 SNP Detail

Summary

• ID
  rs225670203
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8774095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGGACC TGAAACCCTC
  TTGAAGCTTC AGAAGGTACC AGCACTCATG GGCTTGCACT CACCCCAGAT AACATACAAG
  TACACATAGT TAAAATTAAA ATAAATTGCT GGGTGGTGGT GGCTCGTGTC TTTAATCCCA
  GCACTCAGGA GGCAGAGGTA AGTGGATGTC TGAGTTTAAG GCTAGTTTGG TCTATGGGGT
  R
  AGTTCCAGGA CAGCCAGGGC TACACAGTGA ATCCCTGCCT CAAAAACAAA AGTACAAAAC
  TGACAGCCAG GACTACACAG AGAAACCCTG TCTCTAAAAA CAAAAACAAA CAAACAAACA
  AAAAATCAAA CCAACCAACC AACCAACCAA ACAAACAAAC AAAAAACCTG CTGGGTAGTG
  GTGGCACATG CCTTTAACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401708126	MGP_WTSI_19_8871221	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225670203					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401708126	MGP_WTSI_19_8871221	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8774095 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10575	CpG island 10575	1439 bp proximal
Polr2g	polymerase (RNA) II (DNA directed) polypeptide G	within coordinates
Rr359559	regulatory region 359559	1695 bp distal
Rr359560	regulatory region 359560	895 bp distal
Rr363766	regulatory region 363766	505 bp proximal
Tssr158056	transcription start site region 158056	1654 bp downstream
Tssr158057	transcription start site region 158057	1673 bp downstream
Tssr158058	transcription start site region 158058	1690 bp downstream
Tssr158059	transcription start site region 158059	1734 bp downstream
Tssr158060	transcription start site region 158060	1764 bp downstream
Tssr158061	transcription start site region 158061	1840 bp downstream