rs225671642 SNP Detail

Summary

• ID
  rs225671642
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32427991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGGCAGT GCTATTTCAT
  ACATCCATTT GGTATGCATT CAACGCCTAT TATGTGAATA GGCAGCGAGT TGAGAGTGAA
  TAGAGGAATT GACAAAAAGG ATGTCTACTA CTGTCTTCCC AAATACAAAA GGTGATTCAT
  TCTTAAGGAT GTATTCTTCT CAAAGAATCT TATTGATTAC GTGGAATACT ACATCAAGGA
  W
  AGAGATGGTG CTGCGAATGG CAATTTAATA CCAACTGAAA TGTGGAATAG CACTCTGATT
  TAAAAAAAAT GTTTTCTTTC AGCAGAACAG CTTTGCTGCC ATTGCTGTTT GTCCAACTTG
  AGCAGACTTT TTAGTTCATA CAGTATTAAC TCTTTTCTTT CCCAGTGACC TGTACCTCCT
  AAATGTGCCA AGATGGTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385510073	MGP_WTSI_12_33062857	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225671642					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385510073	MGP_WTSI_12_33062857	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32427991 () rs orientation: forward

Symbol	Name	Function Class
Ccdc71l	coiled-coil domain containing 71 like	797 bp upstream
Cpgi4541	CpG island 4541	440 bp proximal
Rr403262	regulatory region 403262	467 bp upstream
Tssr113128	transcription start site region 113128	700 bp upstream
Tssr113129	transcription start site region 113129	772 bp upstream
Tssr113130	transcription start site region 113130	880 bp upstream
Tssr113131	transcription start site region 113131	919 bp upstream
Tssr113132	transcription start site region 113132	1078 bp upstream
Tssr113133	transcription start site region 113133	1139 bp upstream
Tssr113134	transcription start site region 113134	1229 bp upstream
Tssr113135	transcription start site region 113135	1753 bp upstream
Tssr113136	transcription start site region 113136	1913 bp upstream