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rs225675882 SNP Detail
Summary
  • ID
    rs225675882
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr19:44385369 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGGCTTCATC TGGAAATGCA
CCTCTTAGCA GCTACTTACA GACACTGCCC CTCAACCTCA CTAGTTCCTG CCCAGCCACG
AAAGAAACTG GCAACCCAGG CAACACCTCG GGTCCTTCGA TTATTTTCTA AGTGAAATAG
TTTCATGTTC CAAGTGAAGA TTTTGCTTAT ATTTTCATAG TTTCACACCA TATCTGTCCC
Y
GACAAATGTC AGCTGTTTAG TTATCAGTTC TAGGCACATT GAACACGAAG ACTTTTTCCA
TGAAAAAATC TTCAGTTACC AAAAGCTAAA ACCCTCCCCT AGCACAGACC CTGCATTAAC
CCCCTTCACT CTGAAAATGA TTTAATTATT CAAATCTCAC TAATCTCTGG GGTTCAGAGG
ATGGACAGAA AGGAGGCATG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss402552112 MGP_WTSI_19_44471420 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225675882 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss402552112 MGP_WTSI_19_44471420 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44385369 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 225 bp proximal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 75 bp proximal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 183 bp proximal
Rr548237 regulatory region 548237 1512 bp distal
Rr548238 regulatory region 548238 within coordinates
Rr548239 regulatory region 548239 1784 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 566 bp upstream
Tssr156606 transcription start site region 156606 504 bp downstream
Tssr156607 transcription start site region 156607 183 bp downstream
Tssr156608 transcription start site region 156608 211 bp upstream
Tssr156609 transcription start site region 156609 421 bp upstream
Tssr159451 transcription start site region 159451 1979 bp upstream
Tssr159452 transcription start site region 159452 1685 bp upstream
Tssr159453 transcription start site region 159453 1616 bp upstream
Tssr159454 transcription start site region 159454 1597 bp upstream
Tssr159455 transcription start site region 159455 1291 bp upstream
Tssr159456 transcription start site region 159456 1172 bp upstream
Tssr159457 transcription start site region 159457 1143 bp upstream
Tssr159458 transcription start site region 159458 1109 bp upstream
Tssr159459 transcription start site region 159459 1017 bp upstream
Tssr159460 transcription start site region 159460 981 bp upstream
Tssr159461 transcription start site region 159461 920 bp upstream
Tssr159462 transcription start site region 159462 888 bp upstream
Tssr159463 transcription start site region 159463 849 bp upstream
Tssr159464 transcription start site region 159464 819 bp upstream
Tssr159465 transcription start site region 159465 799 bp upstream
Tssr159466 transcription start site region 159466 781 bp upstream
Tssr159467 transcription start site region 159467 717 bp upstream
Tssr159468 transcription start site region 159468 471 bp upstream
Tssr159469 transcription start site region 159469 406 bp upstream
Tssr159470 transcription start site region 159470 392 bp upstream
Tssr159471 transcription start site region 159471 359 bp upstream
Tssr159472 transcription start site region 159472 333 bp upstream
Tssr159473 transcription start site region 159473 314 bp upstream
Tssr159474 transcription start site region 159474 292 bp upstream
Tssr159475 transcription start site region 159475 245 bp upstream
Tssr159476 transcription start site region 159476 227 bp upstream
Tssr159477 transcription start site region 159477 218 bp upstream
Tssr159478 transcription start site region 159478 197 bp upstream
Tssr159479 transcription start site region 159479 179 bp upstream
Tssr159480 transcription start site region 159480 147 bp upstream
Tssr159481 transcription start site region 159481 88 bp upstream
Tssr159482 transcription start site region 159482 within coordinates
Tssr159483 transcription start site region 159483 80 bp downstream
Tssr159484 transcription start site region 159484 114 bp downstream
Tssr159485 transcription start site region 159485 240 bp downstream
Tssr159486 transcription start site region 159486 247 bp downstream
Tssr159487 transcription start site region 159487 328 bp downstream
Tssr159488 transcription start site region 159488 345 bp downstream
Tssr159489 transcription start site region 159489 399 bp downstream
Tssr159490 transcription start site region 159490 501 bp downstream
Tssr159491 transcription start site region 159491 536 bp downstream
Tssr159492 transcription start site region 159492 587 bp downstream
Tssr159493 transcription start site region 159493 613 bp downstream
Tssr159494 transcription start site region 159494 633 bp downstream
Tssr159495 transcription start site region 159495 751 bp downstream
Tssr159496 transcription start site region 159496 821 bp downstream
Tssr159497 transcription start site region 159497 834 bp downstream
Tssr159498 transcription start site region 159498 846 bp downstream
Tssr159499 transcription start site region 159499 876 bp downstream
Tssr159500 transcription start site region 159500 907 bp downstream
Tssr159501 transcription start site region 159501 922 bp downstream
Tssr159502 transcription start site region 159502 958 bp downstream
Tssr159503 transcription start site region 159503 971 bp downstream
Tssr159504 transcription start site region 159504 1050 bp downstream
Tssr159505 transcription start site region 159505 1163 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory