rs225677435 SNP Detail

Summary

• ID
  rs225677435
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:75455466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGTTGGCT AACTTGTTTT TACCCAGGGA
  AAGATAACGC AGTCCTTGCA AGGGGCCAAA TACCAGTTAT CCGCAGGGAC AGGAAGGCTG
  GCTTTCACAG AGGGAAAAGC TCCTGGCAAC TAATGGCTTC TCAGAGGGGA GAAGTGGAAA
  R
  AAGCCGAATG TAATGAGCAA AAAAAAAATC ATGATGGGCC TTGGTAATGA CCTCAGGGCC
  TTAGGAGGAG AAGACCTTAA GCTTTGTTTA ATCTAATGAT AGTTCCCTAA CTTTTTTATT
  TGTTTGTTTT GGTTTTGGTT TTGGTTtttt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323751025	CHEV_11_75378142	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225677435					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75455466 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D11Jcs7	DNA segment, Chr 11, John C. Schimenti 7			746 bp distal
Rr451207	regulatory region 451207			1867 bp distal
Rr451208	regulatory region 451208			within coordinates
Slc43a2	solute carrier family 43, member 2			Intron
				Noncoding-Transcript-Variant
Tssr102977	transcription start site region 102977			974 bp downstream