rs225678832 SNP Detail

Summary

• ID
  rs225678832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135304450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTCATGCTC CACCTGCATG CAGTTCCCTG
  ACCAGGACTA CCGATCAGCT GAGGCAGAGT AATGGCTACC TTAGTCTCCT GCCATGGACA
  CTTAAGAAAA TATTttttat gtgtctgagt atttgcctgc atgtgtgcat gtgtactaca
  Y
  gcatgcctgg tgcccttgag ggtgtctgat gctctggagc taaacttatg ggtagttgtg
  aaccatccca tgggcactgg gaaccaaacc tgggtcttcc ttcagcaagg gcaccaagtg
  ctctgaactg ccgagtcgtc tttgaagccc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319989536	CHEV_1_137273289	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225678832					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135304450 () rs orientation: forward

Symbol	Name	Function Class
Cpgi790	CpG island 790	1236 bp distal
Rr12587	regulatory region 12587	1050 bp distal
Rr28596	regulatory region 28596	1049 bp distal
Rr30685	regulatory region 30685	1351 bp proximal
Shisa4	shisa family member 4	1475 bp upstream
Tssr13848	transcription start site region 13848	1779 bp upstream
Tssr13849	transcription start site region 13849	1766 bp upstream
Tssr13850	transcription start site region 13850	1614 bp upstream
Tssr13851	transcription start site region 13851	1602 bp upstream
Tssr13852	transcription start site region 13852	1484 bp upstream
Tssr13853	transcription start site region 13853	1467 bp upstream
Tssr13854	transcription start site region 13854	1448 bp upstream
Tssr13855	transcription start site region 13855	1435 bp upstream
Tssr13856	transcription start site region 13856	1427 bp upstream