rs225683562 SNP Detail

Summary

• ID
  rs225683562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:41395389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACGTCACG TGGGCAGTTC
  CATCCTTGCC AGGGCGGGGG GAGATCATCC GTGGTGCAGA TGTGAGGAAA GCTCCATTGT
  GCCGCGCGTG ATCCTCCCAG GACAAGAAGG ACGGCTTGCG ACGCACGGAC TGCTGCCCTA
  GAGGTCTCCG CGGCCGCTTC TCTCCCTCCG GCCGGCTTCC TAGTGGTCTC GCCCGTTCCG
  Y
  CCCGCCCCGC CGGGCTGCTC ACGTGACCGG CGCGCGCTCC CGCGGGGCGG GCTTCTCGGG
  GGGCGGCGCC GCAGGGACGC AGTGCTAGAC GGAGCCTGCT TTGCCGCAGC TTTTCTCCCG
  GACGCCTGGG CTGAAGACAC AATGTCGGGC TCCTCCCGCC GACTGCTCTG GGCCGCCACC
  TGCCTCGCCG TGCTCTGCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380146490	MGP_WTSI_10_41239199	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225683562					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380146490	MGP_WTSI_10_41239199	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:41395389 () rs orientation: forward

Symbol	Name	Function Class
Cd164	CD164 antigen	107 bp upstream
Cpgi1473	CpG island 1473	within coordinates
Gm67065	predicted gene, 67065	within coordinates
Rr401848	regulatory region 401848	697 bp downstream
Rr401849	regulatory region 401849	154 bp downstream
Rr430366	regulatory region 430366	within coordinates
Rr430367	regulatory region 430367	790 bp distal
Rr430368	regulatory region 430368	231 bp distal
Rr430369	regulatory region 430369	10 bp proximal
Tssr93048	transcription start site region 93048	43 bp upstream
Tssr93049	transcription start site region 93049	62 bp upstream
Tssr93050	transcription start site region 93050	100 bp upstream
Tssr93051	transcription start site region 93051	337 bp upstream
Tssr93052	transcription start site region 93052	424 bp upstream
Tssr93053	transcription start site region 93053	457 bp upstream
Tssr93054	transcription start site region 93054	481 bp upstream
Tssr93055	transcription start site region 93055	555 bp upstream
Tssr93056	transcription start site region 93056	587 bp upstream
Tssr93057	transcription start site region 93057	597 bp upstream
Tssr93058	transcription start site region 93058	1136 bp upstream
Tssr97407	transcription start site region 97407	290 bp upstream
Tssr97408	transcription start site region 97408	273 bp upstream