rs225685180 SNP Detail

Summary

• ID
  rs225685180
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107905041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGTGTA TATGTGTGTC
  TGTATCTGTG TGTGTCTCTG TATGTGTCTG TTTGTATCTG TGTATAAATG TGTCTGCCTG
  TATCTGTGTG TATGCATGTG TGCATGTCTG TGTACATGTG TGTCTGTGTA TATGTGTGTC
  TGTATCTGTG TGTGTGTCTA TGTGTCTGCA CATGTATGCC TATCTGTATC TGTCTATGTG
  W
  CATGTGTGTG CATTGTGTGT GCATGTGCAT GCGTGCATAT ATGTGTATAT ATGTGTCTGT
  GTATATGTGT GTCTGTATCT GTGTGTCTGT CTGAGTGTCT GTGTGTGTGG TGTGTGTCTG
  TATCTGTGTG TCTGTCTGAG TGTCTGTGTG TCTGTGTCTG TGTGTGTGAT GTGTGCGTGT
  GTGTGTGTGT GTGCGTGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387277528	MGP_WTSI_12_109176992	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225685180					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387277528	MGP_WTSI_12_109176992	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107905041 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr387761	regulatory region 387761	452 bp downstream
Tssr117636	transcription start site region 117636	120 bp upstream
Tssr117637	transcription start site region 117637	91 bp upstream
Tssr117638	transcription start site region 117638	33 bp upstream
Tssr117639	transcription start site region 117639	14 bp upstream
Tssr117640	transcription start site region 117640	within coordinates
Tssr117641	transcription start site region 117641	11 bp downstream
Tssr117642	transcription start site region 117642	48 bp downstream
Tssr117643	transcription start site region 117643	166 bp downstream
Tssr117644	transcription start site region 117644	277 bp downstream
Tssr117645	transcription start site region 117645	308 bp downstream
Tssr117646	transcription start site region 117646	348 bp downstream
Tssr117647	transcription start site region 117647	364 bp downstream
Tssr117648	transcription start site region 117648	424 bp downstream
Tssr117649	transcription start site region 117649	450 bp downstream
Tssr117650	transcription start site region 117650	488 bp downstream