rs225688456 SNP Detail

Summary

• ID
  rs225688456
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30120601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGGCATA TTTCTGTGGA
  TTCTAAGGCC AGCCTGGTCT ACATGGTGAG TTTCAGGACA GCTAGAGCTA CATAGTTTGA
  CTCTGTCTCT GGGGGTAGGG TGGAGTTGGG GCTGAAAAAC AAACAAAAGA GCCAATATTG
  GTAGTTGATA TGGCTCCAAT ATCTATAACC CAACATTTGG GAAATGGAAG CAAGAGAATC
  W
  GGAGGGGTTC AAGGTTATCC TCAGTTACCT AGAGTGCTAG GCCAACCTGG GCTACATGAA
  TCTGCCCTTC CCCTTACTCT CTCCTCTCTC TCTCTCTCTC AAATCAAAAC TGAAACCAAA
  CGGGGAGAAA AAAAGCATTA TAAATGAAAG TTAACTCTAA AGAAGGGAAC GGCCACGTGG
  AAAAGAGAGA TGTAAGGCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370906829	MGP_WTSI_7_31206195	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225688456					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370906829	MGP_WTSI_7_31206195	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30120601 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	241 bp proximal
Cpgi18800	CpG island 18800	1918 bp proximal
Hcst	hematopoietic cell signal transducer	1322 bp upstream
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	556 bp upstream
Rr368301	regulatory region 368301	1234 bp downstream
Rr400239	regulatory region 400239	377 bp upstream
Rr400240	regulatory region 400240	956 bp upstream
Rr644812	regulatory region 644812	1504 bp distal
Rr644813	regulatory region 644813	832 bp distal
Rr644814	regulatory region 644814	66 bp proximal
Rr644815	regulatory region 644815	740 bp proximal
Rr644816	regulatory region 644816	1609 bp proximal
Tssr65711	transcription start site region 65711	1511 bp downstream
Tssr65712	transcription start site region 65712	1484 bp downstream
Tssr65713	transcription start site region 65713	1227 bp downstream
Tssr65714	transcription start site region 65714	548 bp upstream
Tssr65715	transcription start site region 65715	1096 bp upstream
Tssr65716	transcription start site region 65716	1213 bp upstream
Tssr65717	transcription start site region 65717	1257 bp upstream
Tssr65718	transcription start site region 65718	1285 bp upstream
Tssr71741	transcription start site region 71741	1400 bp upstream
Tssr71742	transcription start site region 71742	1304 bp upstream
Tssr71743	transcription start site region 71743	814 bp upstream
Tssr71744	transcription start site region 71744	803 bp upstream
Tssr71745	transcription start site region 71745	432 bp downstream