rs225688664 SNP Detail

Summary

• ID
  rs225688664
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:99662515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTAAAAGT CACGCAGTAT
  TGTTTGAAGG TGTGAAGAGG TCATGATGAG CAGCTGAGGC TTTGCATTGT CAGAGGTCAG
  GTAAGACCAC TGATGAAGGT GCAGCCTCAG TTGCAGTTGA TGTCCCAGGA CTGAAGGGGT
  CATGTAAAGA AACTGAGGTG TGGCAACATA GAGGGAACCT ATGAGAAGCT ATTGGTGAAG
  Y
  CTAGTTGCAG TAGAAGACCC AAGCGTATTA GAGTTGCCAG TACCATGGGA TGACCACCAA
  GAACAGCAGT CACAGTAGAG AGGAGTCAAC CAGAACCTAG AGTGCTACCG AAGGCAGAGC
  TGGAGAAATT ACCAAAGCTC TTTTGAGAGG CTCAGGAGAT AGTGAGTGGA TCCTAGACAT
  TGGAACAAGA AGCTGTAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325081750	CHEV_15_99595065	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225688664					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:99662515 () rs orientation: forward

Symbol	Name	Function Class
Cers5	ceramide synthase 5	within coordinates
Gm17058	predicted gene 17058	1357 bp upstream