rs225689086 SNP Detail

Summary

• ID
  rs225689086
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:96356801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTACAAA AATGAACGAC
  ATGATTGCTG CCCACAAAGA GCTCAAAGAG ATGGGGAGAT ACATTGTGAC AGCTGCACAG
  CTCTGTGTGC TCAACCCCCC ACTAAATTGT ACACTTAGGT TGGTAAATTG TATTATATAG
  AATAATAGGT CTCAGAATTG TTTCAAATAA ATAAAAAAAT TACTAATTCT GTTTATTACA
  Y
  AAAACCAGGA AGAAGTGGCC ATAATTCAGT CCTGGAAGTA TGAAAGGAGA CTGCCAACAA
  TGAGCAGAGT CTGAATTTAA ATCTTAAGGG GAAAAAATAC TGTTAATGTG TTGCATAATA
  ATTCAAACAA AAGCCAGAGA GGAAAAATGT CACAGAGGTG AGAAATGTGT CTTCTGCCCT
  CCCTTCATCC CTCCCTCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365914377	MGP_WTSI_5_96637961	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225689086					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365914377	MGP_WTSI_5_96637961	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:96356801 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16074	CpG island 16074	1021 bp proximal
Gm72185	predicted gene, 72185	within coordinates
Mrpl1	mitochondrial ribosomal protein L1	556 bp upstream
Rr367885	regulatory region 367885	1009 bp upstream
Rr614891	regulatory region 614891	1772 bp distal
Rr614892	regulatory region 614892	31 bp distal
Rr614893	regulatory region 614893	61 bp proximal
Rr614894	regulatory region 614894	562 bp proximal
Rr614895	regulatory region 614895	1100 bp proximal
Rr614896	regulatory region 614896	1213 bp proximal
Tssr47395	transcription start site region 47395	521 bp upstream
Tssr47396	transcription start site region 47396	802 bp upstream
Tssr47397	transcription start site region 47397	1186 bp upstream
Tssr51962	transcription start site region 51962	1063 bp downstream