rs225698057 SNP Detail

Summary

• ID
  rs225698057
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113281545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCA GCCTCGACCT CCTCCCCCTG
  Y
  GAGCCCCAAC CCAACCCCAG CCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910471	CHEV_6_113254578	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225698057					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113281545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17838	CpG island 17838	1732 bp proximal
Cpne9	copine family member IX	within coordinates
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	1041 bp downstream
Gm67816	predicted gene, 67816	1037 bp downstream
Rr399829	regulatory region 399829	1788 bp upstream
Rr636481	regulatory region 636481	1994 bp distal
Rr636483	regulatory region 636483	951 bp proximal