rs225701679 SNP Detail

Summary

• ID
  rs225701679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58278449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCACTGCTG CCCTGTAGCT CTGGTCTTAT
  TTTCCTAGAA GAGTTTCTAG TGGAGCGCTG CTGATCTTTT GTGATGGTGG GCGGAGAGGA
  GGACAGGAGG GCAAGGGTGG GGCCGTCTCA GGAGTCAGGG CCAGAAGTGA ATGTGTAATG
  Y
  CCTCCTGGCT AACGTGTCAA TCCTGGCTAA CAGAACTCTT GGGAATGTGG TCTAGTGATG
  TCCAAGAAGG AAAAAAAAAG GTACCAATCA AAAACCAATA ACCAGCCTGT CTCAGCTAAA
  AAACAGCTCA GACTTATACG AGCTTAAGAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323690066	CHEV_11_58201125	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225701679					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58278449 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr101739	transcription start site region 101739	862 bp downstream
Tssr101740	transcription start site region 101740	817 bp downstream
Tssr101741	transcription start site region 101741	799 bp downstream
Tssr108157	transcription start site region 108157	819 bp upstream
Tssr108158	transcription start site region 108158	787 bp upstream