rs225704071 SNP Detail

Summary

• ID
  rs225704071
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6137260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGCTCAA AAGCCAAGTT
  CTGGAGATAG CTTTTTTTCT GACCTTCATC TATAAAGATG CCGAAATGTC TAGCGGCTTT
  AGAACAAGCT GAATTCTCAA CTGTTAAATA ATAATAAATA AATCTCACCG AAATGTTGAG
  AAAATTTCTA ACAGCTGTAG CTTACAGTCC TTATTAAATC TAATGGGAAC AATATTCTAA
  R
  AAATTCTCCT CTTAGATGCT CAAAATGAGA ATTAAAAATC TAAAGAGACT ACACTGTGTC
  TTTGAACTTG CTGTTCCTTT TCACTGGCTC TCATGTTCCT GGTCCCCACC TCCCCCCAGG
  TTCTAACATG GCCCCTTTTC CATGCCCTTG TTCAACATGT TCAGAATATG TCATTGTTCA
  GCATACAGTA ATTCATATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399596458	MGP_WTSI_18_6137258	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225704071					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399596458	MGP_WTSI_18_6137258	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6137260 () rs orientation: forward

Symbol	Name	Function Class
Arhgap12	Rho GTPase activating protein 12	1158 bp upstream
Cpgi9676	CpG island 9676	445 bp distal
Gm58680	predicted gene, 58680	within coordinates
Rr405549	regulatory region 405549	1023 bp downstream
Rr533476	regulatory region 533476	1383 bp distal
Rr533477	regulatory region 533477	1034 bp distal
Rr533478	regulatory region 533478	79 bp distal
Rr533479	regulatory region 533479	30 bp proximal
Tssr149959	transcription start site region 149959	833 bp downstream
Tssr152339	transcription start site region 152339	1390 bp upstream
Tssr152340	transcription start site region 152340	1261 bp upstream
Tssr152341	transcription start site region 152341	1192 bp upstream