rs225705283 SNP Detail

Summary

• ID
  rs225705283
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190955541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAGAAAG CATGCTATAC
  TTTCCCCAAG TGTGGCTTAG GTCACTTAAC ACAATGATTT CCAGTTCCAT CCATTTTTCC
  TACAGCAATT TTCATTCTTT GCTAGCAAAA TTCAATTGCT GGGGCCAGAA GATGGCTCAG
  CAGATAAAGA CTTCAATAAT CCTCAGACCC GGAGTTCATT CCCTACAACC TACCTGGTGG
  R
  AGGAACGAAC CAACCTGCTC TCTGATCTCC ACAGATACAC TGTAGCACTT GCTCCCATAC
  TCACCCACAT ACATGTAAAT AAATAATTTT TAAAATCCCA TACATGTATA CATATAGAAC
  GCATGTTCTT TAACCATGTA TCTGTTGATT GCCATCTGGG TTAGTTCTTT ATTTAGCTAT
  TGTGAATAGT GCAGCAATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352828682	MGP_WTSI_1_193047223	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225705283					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352828682	MGP_WTSI_1_193047223	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190955541 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1220	CpG island 1220	499 bp proximal
D730003I15Rik	RIKEN cDNA D730003I15 gene	1110 bp upstream
Rr26272	regulatory region 26272	865 bp distal
Rr29193	regulatory region 29193	459 bp proximal
Rr396715	regulatory region 396715	808 bp upstream
Tssr372	transcription start site region 372	1503 bp downstream
Tssr10744	transcription start site region 10744	1099 bp upstream
Tssr10745	transcription start site region 10745	1118 bp upstream
Tssr10746	transcription start site region 10746	1702 bp upstream
Tssr15770	transcription start site region 15770	1567 bp downstream
Tssr15771	transcription start site region 15771	1632 bp downstream
Tssr15772	transcription start site region 15772	1915 bp downstream
Tssr15773	transcription start site region 15773	1928 bp downstream