rs225712590 SNP Detail

Summary

• ID
  rs225712590
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:45608048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGTACAC ACGTAGTCCC
  ATCTTCCACA AACCGTCTTC CAAGACCTTG CCAGATTTAT GCCCAGAGAA AAATACACAA
  GTCAAAAAGG TAGGTTCCCG CAGACCAAAT TATGATGTAT GAAAATCAGG AGTGAGCTGG
  GTTCAGGCGC TGGGTATCAT CACCCTCATC CCCCCCCCCC AGCCCCCCAC TCCCCACCCC
  B
  GCCTCCCTAC CCCCGGCTTT GCTGAGTCCT GTGGTACTAG CAGCTGCCCT CAGGGCTAGG
  AGTCTGCAGT GTCTGTAAAG GAAGGAGACA GGCCTTTCCT CTCTTGAAGC ATCTTTCAGG
  TGTGCTCTGA GAGAGCAGCA GAGGATGCAA AGCTTTCCCC TTTTCCCAGG GAGTATGGCC
  AAGCTGCCTC CCATTTTAAC                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss385832502	MGP_WTSI_12_46662252	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs225712590					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385832502	MGP_WTSI_12_46662252	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T