rs225712782 SNP Detail

Summary

• ID
  rs225712782
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48340281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTAATTG CCCATCAATG
  GGAAGAGAGG CCCTTGGTCT TGCGAAGATC ATATGCCCCA GTACAGGGGA ATGCCAGGGC
  CAGGAAGCAG GAGTGGGTGG GCTGGGGATC AGGGTTGGGG GAGGGCATGG GGGCTTTTGG
  GATAGCATTT GAAAGGTAAA TGAAGAAAAT ATCTAATAAA AAAATACAAA AAAAATATTT
  W
  AAAATAAAAA ATTTTTAAAA ATAAAAAAGA AAGGTATGTA TATCATCTTC CTTTATGTTC
  AGGTAACATT GCAAAAGAAA AAGCAGAAGG AATCTGAGAA GATAAAAAAT AAGGGAAAAG
  CTTCAAAATG ACATCTTCTC AGCAAAACAC AGTCATTCCA TTCACAGACC TAGAACAGTT
  GTGAATACCT ACACAGGTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss371261733	MGP_WTSI_7_55945903	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	A	T	A	T	A	T	T	T	A	T	T	T	T	T	T	A	A	T	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs225712782					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	A	T	A	T	A	T	T	T	A	T	T	T	T	T	T	A	A	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371261733	MGP_WTSI_7_55945903	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48340281 () rs orientation: forward

Symbol	Name	Function Class
Tssr72617	transcription start site region 72617	1226 bp downstream
Tssr72618	transcription start site region 72618	1243 bp downstream
Tssr72619	transcription start site region 72619	1252 bp downstream
Tssr72620	transcription start site region 72620	1291 bp downstream