rs225715611 SNP Detail

Summary

• ID
  rs225715611
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98810397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATCCTTCC ACTACAGCCA
  TGTTTTCGTA GTTTATCTTT CCCTGCCCCT ACAGTAAAGT ATCTTTAAAC TCCAAATCTG
  CTTCACAAAC TGGCAAGTCT GAAAATGAGT TTCTGGAATT AAGCCACGAA TCCCAGTTTG
  GACCGGGCGA AGGTCCCTAA AAGTTGACAG GAACTCCTCA GGCTGCCAGC TGACCCTGGA
  R
  AGTTGTGCAT CCTGCTTGTT CCCACATACG CCCATTTCAC TACAGTTCCT ACCGTCGTAC
  TTAGACTCCC TATTATCCAA GCATCCTGTC CTCATTTCCA ACACCAAGCT TCTAAAGCTC
  CCGGTGCTAT GGACACGTGT GATGTGCAGC TCATCTTCTC CCACAAATGG ACCTCCCCTC
  CATGCCATTC AAAGTACACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321222357	CHEV_4_98588851	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225715611					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98810397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14474	CpG island 14474	582 bp proximal
Rr398351	regulatory region 398351	1051 bp upstream
Rr595805	regulatory region 595805	within coordinates
Rr595806	regulatory region 595806	1160 bp proximal
Rr595807	regulatory region 595807	1450 bp proximal
Rr595808	regulatory region 595808	1730 bp proximal
Tssr37901	transcription start site region 37901	768 bp upstream
Tssr37902	transcription start site region 37902	1499 bp upstream
Tssr37903	transcription start site region 37903	1564 bp upstream
Tssr37904	transcription start site region 37904	1591 bp upstream
Tssr37905	transcription start site region 37905	1655 bp upstream
Tssr37906	transcription start site region 37906	1685 bp upstream
Tssr37907	transcription start site region 37907	1748 bp upstream
Usp1	ubiquitin specific peptidase 1	1650 bp upstream