rs225725865 SNP Detail

Summary

• ID
  rs225725865
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100143691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGTAGCC ACCGGCAGCT
  TTGAAGAACG AGACACCTTT AGAGAAGCTT GACCTTGGAG GCCTCAGCCT GAGACCTCAA
  AGCAGCCTCC AGGTAAGGAG TCCCGGCTAA GGAAGCCTTC TCTCAGGCCT GGGGCCTAGG
  GCTGCTCAGC AAGACAATAA AAATTCCCCT CCTCCCACCC TGATGAGAGC CTCTTCACAG
  Y
  TCAGCAATCC CCTTCTTCAT CCCTGATCAC CTTCTGGCCC GTAAAGATGG CGGACCCCAG
  TGTATAAGGG GAGAACCTGA GTGGGGTGGG GACTGGTTCC AGGTGGCCTT GGCAGTCAAC
  AGCAGAGCTG GGGCAGAAGC TTATGGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTTATGG TGTGTGTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372520090	MGP_WTSI_7_107642993	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225725865					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372520090	MGP_WTSI_7_107642993	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100143691 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19484	CpG island 19484	774 bp distal
Gm72028	predicted gene, 72028	1235 bp upstream
Rr368386	regulatory region 368386	1238 bp upstream
Rr400469	regulatory region 400469	1035 bp downstream
Rr652131	regulatory region 652131	1465 bp distal
Rr652133	regulatory region 652133	1137 bp distal
Tssr68123	transcription start site region 68123	1160 bp downstream
Tssr68124	transcription start site region 68124	1114 bp downstream
Tssr68125	transcription start site region 68125	670 bp downstream
Tssr68126	transcription start site region 68126	636 bp downstream
Tssr68127	transcription start site region 68127	529 bp downstream
Tssr68128	transcription start site region 68128	396 bp downstream
Tssr68129	transcription start site region 68129	154 bp downstream
Tssr68130	transcription start site region 68130	407 bp upstream
Tssr68131	transcription start site region 68131	1503 bp upstream
Tssr73743	transcription start site region 73743	1193 bp downstream
Ucp2	uncoupling protein 2 (mitochondrial, proton carrier)	within coordinates