rs225725994 SNP Detail

Summary

• ID
  rs225725994
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:80306690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGGGTGGC CCGGACCACC
  CGCTCTGAGG CGATTTGCCC TCCGGCGGCG CCACCTCCCC GCGCCGCGGC GAACTGTTCG
  CGGGCTCCAG GGCAGGGGTG CTCCGCTCTC CCGCCCGGTG CCTGTAACTC AATACCCCAC
  CTCGCAGTGG CCGCGATGTC CCCGCCTCCG CTCTTGCGCG CCGGGAATTG GTTTCCAACC
  S
  GGAGCCCAGG AGTGCAGCGG CCAGAGCGGA TCAGGGCTCA GGGCTGTAGC GGGTGGGGGT
  GGCTGCTAAC CTTCCTCTGC TGCTTCTCCC AGGCCGGATC CAGGAGCAGG TCCCGATCCC
  AGTCCTCTTC AGGCTGCATG TAGTCGTTGG TCTGCTGGGA ATCATAATGG TCCATGATGG
  TGCGTGCGTG CTAGGAGCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386629947	MGP_WTSI_12_81360903	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225725994					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386629947	MGP_WTSI_12_81360903	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:80306690 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Actn1	actinin, alpha 1			Intron
				mRNA-UTR
Cpgi4813	CpG island 4813			within coordinates
Gm47766	predicted gene, 47766			within coordinates
Rr468866	regulatory region 468866			935 bp distal
Rr468867	regulatory region 468867			within coordinates
Rr468868	regulatory region 468868			148 bp distal
Rr468869	regulatory region 468869			165 bp proximal
Tssr116876	transcription start site region 116876			226 bp downstream
Tssr116877	transcription start site region 116877			398 bp downstream
Tssr116878	transcription start site region 116878			419 bp downstream
Tssr116879	transcription start site region 116879			440 bp downstream
Tssr116880	transcription start site region 116880			463 bp downstream
Tssr116881	transcription start site region 116881			580 bp downstream
Tssr116882	transcription start site region 116882			604 bp downstream