rs225728861 SNP Detail

Summary

• ID
  rs225728861
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100580758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACCTCTG ACTCAACTAT
  CTCATGTCCT CCTCCTTTAA TGTATCGGAG ACTTGATCTT TGGTTCCCTA GGTCATAGGT
  CTCAGGCTAT ACTGCCTAGG ACCACAGAAG AAGATGCCCT AGACACCTAG CCATTTCACC
  AAACTTCAGT GGTGGGGGGT GGGGGTGGGG GGTGTTGGGG GTGGGGGTGG GGGGAGTGTG
  S
  ATGACTTACT TCTGGTTCTT CCCCAGCCTG TGATGTAGCA GGGAGAGTTG TTAGCCAGGA
  TGGTTCCCTC CCGGGGCAGA ACACCCAGCT GGACATAGTT ATTGAGTGTA ACACTCTTGG
  CCAAGCGCAG CAGGGCGATG TCATAGCTGC AGGAGGAAAG ATGGCGGCTC ACTCACCTGG
  TAAGGTCTGC CATTCAGAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395181718	MGP_WTSI_15_100513308	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225728861					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395181718	MGP_WTSI_15_100513308	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100580758 () rs orientation: forward

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Gm62586	predicted gene, 62586	180 bp downstream
Rr301613	regulatory region 301613	43 bp proximal
Rr301614	regulatory region 301614	1043 bp proximal
Rr311412	regulatory region 311412	1842 bp proximal
Rr312498	regulatory region 312498	within coordinates
Tssr133155	transcription start site region 133155	1701 bp upstream
Tssr133156	transcription start site region 133156	1732 bp upstream
Tssr133157	transcription start site region 133157	1748 bp upstream
Tssr136477	transcription start site region 136477	1613 bp upstream
Tssr136478	transcription start site region 136478	1292 bp upstream
Tssr136479	transcription start site region 136479	958 bp upstream
Tssr136480	transcription start site region 136480	946 bp upstream
Tssr136481	transcription start site region 136481	926 bp upstream
Tssr136482	transcription start site region 136482	920 bp upstream
Tssr136483	transcription start site region 136483	903 bp upstream
Tssr136484	transcription start site region 136484	836 bp upstream
Tssr136485	transcription start site region 136485	806 bp upstream
Tssr136486	transcription start site region 136486	29 bp upstream
Tssr136487	transcription start site region 136487	43 bp downstream
Tssr136488	transcription start site region 136488	71 bp downstream
Tssr136489	transcription start site region 136489	103 bp downstream
Tssr136490	transcription start site region 136490	132 bp downstream
Tssr136491	transcription start site region 136491	425 bp downstream
Tssr136492	transcription start site region 136492	1734 bp downstream