rs225733587 SNP Detail

Summary

• ID
  rs225733587
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:34843229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGCGGG GAGCGAGCTC
  TGTGACCGGC GGGGTCGGAC CCGCAGCCCG GGGCGGCCGC GGGGCGAGCA TGGGGCAGGC
  TGGCCGCAGA GCTGCCTGGT CAGGGCCGCG GCGGGGCGAG CGGGCGGGCG GGCGAGCGGG
  CGGGCCACAG GTGCGGCGCG GCGCGGCGCG GAGGCCAGCC CCGGGCGGCC GGTCAGCACT
  K
  CCCCAGCCCG GCGAGGAAGC CCGCCTGGCT GCGGAGATCA TTCATTTAGG CGGCCGCTTT
  CAAAACCCAG GCGGGAGCGT TCGTCTGGGA GGCGGTAGGA ACGTGGTCGA AGTTTTCCGC
  CAGCCGCCCG AGCCGGAGCG GTCCGAGACC GGGGCGGAGA CTTTGGAGGG GGATTACTTA
  GATTTTCTTG GGGCAAGTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395918470	MGP_WTSI_16_35022945	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225733587					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395918470	MGP_WTSI_16_35022945	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:34843229 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8220	CpG island 8220	within coordinates
Gm21691	predicted gene, 21691	523 bp upstream
Hacd2	3-hydroxyacyl-CoA dehydratase 2	within coordinates
Rr404796	regulatory region 404796	422 bp downstream
Rr515294	regulatory region 515294	614 bp distal
Rr515295	regulatory region 515295	421 bp distal
Rr515296	regulatory region 515296	336 bp proximal
Rr515297	regulatory region 515297	1618 bp proximal
Tssr138201	transcription start site region 138201	419 bp downstream
Tssr138202	transcription start site region 138202	380 bp downstream
Tssr138203	transcription start site region 138203	600 bp upstream