rs225741814 SNP Detail

Summary

• ID
  rs225741814
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89814247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCATACA TATTGCTGTT
  TTATTGGACG GTGCTTTTAT ATTTCTTTCA AGATTGGCAC ATATGAGATA CACTTGTCCT
  AAATATTATG CAGCTACAGG TTTTACAAGT ATAACAATAG CAATTTCATT TGATTTGAGG
  GAATTTATGG TTCTATTATT TGTGCTTGAG TTCTGAGATA TGCCTTCCCC CCCCCCCCCC
  M
  CACACACACA CACACACAAT TTTTAACCTA AAACCAGAGT TTCTCTTTAG TCCTGGCTGT
  CCTGGAATTT ACTCTATAGA CCAGGGTGAC CTTGAAACTC AGAGATCTGA ATGCCTATGC
  CTCCCAAGTG TTAGAATTAA AAGGTGTGTA CCACCACTTC CTGGTGAGTT CTGAGATTCT
  GGCTGTGAAA GAAACATTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss372272098	MGP_WTSI_7_97313549	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs225741814					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372272098	MGP_WTSI_7_97313549	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89814247 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67720	transcription start site region 67720	1965 bp downstream
Tssr67721	transcription start site region 67721	1882 bp downstream
Tssr67722	transcription start site region 67722	944 bp downstream
Tssr67723	transcription start site region 67723	466 bp upstream
Tssr67724	transcription start site region 67724	1013 bp upstream
Tssr67725	transcription start site region 67725	1058 bp upstream
Tssr67726	transcription start site region 67726	1071 bp upstream
Tssr67727	transcription start site region 67727	1135 bp upstream