rs225742512 SNP Detail

Summary

• ID
  rs225742512
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64082444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGACAGC CCTATGCCGT
  CAGTGAATTG GCAGGTATGG ATTTGCATTC GTCATCATGG TTATATACTT TCCAGGGCTC
  CTTTGCAGTA AATGATGAGA TTCCATTGGT CCGTGTTTCT GAACTACATG ATTTTCCTTG
  GCTATTCTGA TACTGCCTTT ATCATGCATT AGTTTTAAGT CATGGGTTTG TTATGAGTTA
  S
  TTCCTAAACC TTTTGTTCTT CCCAATTTTA GGTCATCAGA CCAGTGCTGA GTCTTGGGGT
  ACTGGCAGAG CTGTGGCTCG AATTCCAAGA GTTCGAGGTG GTGGGACCCA CCGATCTGGC
  CAGGGTGCCT TTGGAAATGT ATCCTTGATT AGTGCTCTTG GCAACTGACC AACTGGACTT
  AGGCTAATTA ATATTTGAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377838337	MGP_WTSI_9_64022969	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225742512					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377838337	MGP_WTSI_9_64022969	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64082444 () rs orientation: forward

Symbol	Name	Function Class
Gm22455	predicted gene, 22455	1961 bp upstream
Gm22571	predicted gene, 22571	711 bp upstream
Gm23136	predicted gene, 23136	1499 bp upstream
Gm23344	predicted gene, 23344	47 bp downstream
Rpl4	ribosomal protein L4	within coordinates
Rr368800	regulatory region 368800	969 bp downstream
Rr681194	regulatory region 681194	1777 bp distal
Rr681195	regulatory region 681195	999 bp distal
Snord16a	small nucleolar RNA, C/D box 16A	270 bp upstream
Tssr2907	transcription start site region 2907	1763 bp downstream
Tssr85596	transcription start site region 85596	1774 bp downstream
Tssr85597	transcription start site region 85597	190 bp downstream
Tssr85598	transcription start site region 85598	260 bp upstream
Tssr85599	transcription start site region 85599	426 bp upstream
Tssr85600	transcription start site region 85600	1807 bp upstream